DprE1 Inhibitors

DprE1 inhibitors were identified by high-throughput screening against mycobacterial whole cells and represent a novel class of compounds as anti-TB agents. DprE1 is an essential mycobacterial enzyme that is involved in the synthesis mycobacterial cell walls. DprE1 is a novel target and as such, these inhibitors are active against M.tb strains resistant to known TB drugs. Several analogues of TCA1 have been shown to have in vivo efficacy in both mouse acute and chronic infection models.

ATP Synthesis Inhibitors

The TB drug bedaquiline targets the ATP synthase enzyme of the TB mycobacteria. ATP synthase is an essential enzyme in the process by which M.tb generates energy in the form of ATP. This project identified a number of inhibitors of this ATP synethesis. This was achieved through a membrane-based screen that has the potential to identify inhibitors of the various targets that constitute the ATP synthesis pathway including Ndh-2, various cytochromes, and the target for bedaquiline, ATP synthase.

RNA Polymerase Inhibitors

RNA Polymerase (RNAP) is the enzyme that transcribes genetic information from DNA into RNA, which, in turn, directs the assembly of proteins that carry out most biological functions and are key structural components of cells. RNAP is a proven target for anti-tuberculosis therapies with the uncommon ability to kill both active and dormant M.tb when the enzyme is inhibited. A class of antibacterial compounds known as rifamycins, which also target RNAP, are used as part of the first-line treatment for TB and can rapidly reduce populations of M.tb to undetectable levels.

Cyclopeptides

Cyclopeptides are natural product derivatives that have a novel mode of action and as such, show excellent activity against drug-sensitive and drug- resistant M.tb in vitro. These compounds exhibit bactericidal efficacy against TB in mice when administered orally. EMBO Tuberculosis 2016. SATB-082 selected as lead clinical candidate.

Macrolides

Macrolides are a diverse family of naturally occurring and semi-synthetic antibiotics that are widely prescribed for treatment of various bacterial infections. They exert their antibacterial activity by inhibiting protein synthesis in pathogenic bacteria. In this program, a proprietary macrolide molecule has been identified that has excellent activity against M.tb and its analogues are being synthesized to improve potency and pharmacokinetics.

Whole Cell Hit-to Lead

A target-based approach for antibacterial drug discovery (for example, inhibition of a particular enzyme) is one potential strategy toward drug development. A complimentary approach that screens for compounds that inhibit the growth of the organism of interest or a model organism, without any bias toward a particular target, can also be pursued. This program utilizes such an approach.

Indazoles

In this project, indazole derivatives have been identified to have excellent in vitro and in vivo activities. Their optimization and mechanism of action studies are currently in progress.

Protein Splicing Inhibitors

The target of the screen is protein splicing, which is an essential step in the expression of genes that are interrupted by an intein and occurs in the pathogenic mycobacteria but in no other bacteria associated with humans. In Mycobacterium tuberculosis, the recA, dnaB and sufB genes are interrupted by closely related inteins. Two of these genes (dnaB and sufB) are essential for growth and the third (recA) predisposes to drug-resistance mutations.

1599

Using structure-based design, a new semisynthetic series of spectinomycin analogs with selective ribosomal inhibition and narrow-spectrum antitubercular activity had been generated. In multiple murine infection models, these spectinamides were well tolerated, significantly reduced lung mycobacterial burden and increased survival. In vitro studies demonstrated a lack of cross resistance with existing tuberculosis therapeutics, activity against multidrug-resistant (MDR) and extensively drug-resistant tuberculosis and an excellent pharmacological profile.

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